Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865904:139865924:[+]	chr4:88420705:88420725:[-]	nonBSJ supported	5UTR	circRNA 5':CGGAAAAAAU-CCAGGUCUUCC 3' \|\|\|\|\|\|\|\| \|\| :\|\|\|\|\|\| target 3': CCUUUUUUUCGGGUCAGAAGU 5'	-19.20	2	RIC-seq
chrX:139866183:139866210:[+]	chr4:88415207:88415236:[-]	nonBSJ supported	CDS	circRNA 5':AAUCUAUAGCUUCCAAAAAAUC--CGGGUC 3' \|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|:\|:\| target 3':CUAGUCUGAGAAGGUUUUAUAGUAGUCUAA 5'	-17.40	1	RIC-seq
chrX:139866201:139866229:[+]	chr4:88415207:88415232:[-]	nonBSJ supported	CDS	circRNA 5':AAUCCGGGUCUUCCAGGAAAUCCGUGUCU 3' \|\|\| \|: \|\|\|\|\|\|\|::\| \|\|\| :\|\| target 3':CUAGUCUGAGAAGGUUUUAUAG---UAGU 5'	-19.80	18	RIC-seq
chrX:139866330:139866349:[+]	chr4:88415209:88415229:[-]	nonBSJ supported	CDS	circRNA 5':CCAGG-UCUUCCAGGAAAUCC 3' \|\|\|: \|\|\|\|\|\|\|::\| \|\|\| target 3':AGUCUGAGAAGGUUUUAUAGU 5'	-18.70	1	RIC-seq
chrX:139866330:139866355:[+]	chr4:88415209:88415232:[-]	nonBSJ supported	CDS	circRNA 5':CCAGG-UCUUCCAGGAAAUCCGUGUCU 3' \|\|\|: \|\|\|\|\|\|\|::\| \|\|\| :\|\| target 3':AGUCUGAGAAGGUUUUAUAG---UAGU 5'	-19.20	1	RIC-seq
chrX:139866618:139866640:[+]	chr4:88415209:88415234:[-]	nonBSJ supported	CDS	circRNA 5':CCAGG-UCUUCCAGC--AUCUCCAGG 3' \|\|\|: \|\|\|\|\|\|\|: \|\|\| \|\|\| target 3':AGUCUGAGAAGGUUUUAUAGUAGUCU 5'	-19.70	1	RIC-seq
chrX:139866618:139866641:[+]	chr4:88415209:88415235:[-]	nonBSJ supported	CDS	circRNA 5':CCAGG-UCUUCCAGC--AUCUCCAGGG 3' \|\|\|: \|\|\|\|\|\|\|: \|\|\| \|\|\|: target 3':AGUCUGAGAAGGUUUUAUAGUAGUCUA 5'	-19.80	6	RIC-seq