Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865885:139865920:[+] chr1:95658078:95658107:[+] nonBSJ supported 3UTR

circRNA 5':CCAGUCAAUCCACA-UCUUCCGGAAAAAAUCCAGGUC 3'


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target  3':CGUCA---AGG-GUAAGAACGUCG-UUUUAA--CCAC 5'

 -15.60 20 RIC-seq
chrX:139865885:139865929:[+] chr1:95658068:95658107:[+] nonBSJ supported 3UTR

circRNA 5':CCAGUCAAUCCACA-UCUUCCGGAAAAAAUCCAGGUCUUCC--AGCCA 3'


            |||| ||| || |||| |:| ||||| ||| |:||


target  3':CGUCA---AGG-GUAAGAACGUCG-UUUUAA--CCACUGUAUUUUGG 5'

 -18.30 20 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865885:139865920:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865885:139865929:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC