5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866207:139866234:[+] | chr6:56323344:56323361:[-] | nonBSJ supported | 3UTR |
circRNA 5':GGUCUUCCAGGAAAUCCGUGUCUUCCAG 3' ||||| ||||||||| target 3':ACAGAAAA----------ACAGAAGGUA 5' |
-16.20 | 30 | RIC-seq |
| chrX:139866243:139866274:[+] | chr6:56323345:56323364:[-] | nonBSJ supported | 3UTR |
circRNA 5':CGUCUUCCAACAAAGCCAUGUCUUCCAGACUA 3' ||||| ||||||||| || target 3': CAGAAAA----------ACAGAAGGUA-GAA 5' |
-14.70 | 3 | RIC-seq |
| chrX:139866260:139866274:[+] | chr6:56323351:56323364:[-] | nonBSJ supported | 3UTR |
circRNA 5':AUGUCUUCCAGACUA 3' ||||||||| || target 3':AACAGAAGGUA-GAA 5' |
-14.40 | 1 | RIC-seq |
| chrX:139865470:139865499:[+] | chr6:56463456:56463487:[-] | nonBSJ supported | CDS |
circRNA 5':CCAUGUCUUCCGGACAAU-CCA-UGU-CUUCCA 3' ||: ||| |:| |||| || ||: ||||| target 3':AGUGAUGAA-GUCGGUUACGGACACGUGAAGGA 5' |
-21.20 | 22 | RIC-seq |
| chrX:139865494:139865538:[+] | chr6:56418091:56418132:[-] | nonBSJ supported | CDS |
circRNA 5':CUUCCAAGAAGCUCCAAGU-CUUCCAGUAAAUCAAGUCUUCCAGCA 3' |||||| :||| ||| || |||| || | target 3':AAAGGUUAC-UGAGAAAAUUGAA---CAAAAGAGAAAGAAAGUGGA 5' |
-14.60 | 2 | RIC-seq |
| chrX:139865502:139865521:[+] | chr6:56342253:56342273:[-] | nonBSJ supported | CDS |
circRNA 5':AAGCUC-CAAGUCUUCCAGUA 3' ||||| | ||||||||| target 3':GUCGAGAGAAAAGAAGGUCAA 5' |
-22.10 | 9 | RIC-seq |
| chrX:139865513:139865573:[+] | chr6:56418091:56418132:[-] | nonBSJ supported | CDS |
circRNA 5':CUUCCAGUAAAUCAAGUCUUCCAGCAAAUCCAGUCUUCCAGCAAUUACUGGUCUUCCACCA 3' |||||:| | |||| |:| |||| |||| |||| target 3':AAAGGUUAC-----UGAGAAAAUUGAACAAAAGAGAA--------------AGAAAGUGGA 5' |
-17.20 | 24 | RIC-seq |
| chrX:139865539:139865573:[+] | chr6:56391166:56391199:[-] | nonBSJ supported | CDS |
circRNA 5':AAUC-CAGUCUUCCAGCAAUUACUGGUCUUCCACCA 3' ||| ||| ||| ||:|||||| target 3':CUAGCGUCUUACCGACGUAGCUAG--AGGAGGUGGA 5' |
-21.90 | 10 | RIC-seq |
| chrX:139865577:139865591:[+] | chr6:56371523:56371535:[-] | nonBSJ supported | CDS |
circRNA 5':CCAGAUCUUCCAGGA 3' |||| |:| ||| target 3':AGUCUUGGA--UCCA 5' |
-8.60 | 14 | RIC-seq |
| chrX:139865577:139865626:[+] | chr6:56513370:56513434:[-] | nonBSJ supported | CDS |
circRNA 5':CCAGAUCUUCCAGGAAAAUCCACG-----UCUUCCAGGAAA-----UC-CA---UGUCU--UCCAA 3' ||| ||| ||||| |||: |||: || || ||||| |||| target 3':AGUCAAGAU-GUCCUAAUAAUCCUUUACAAGAGAGUCUGUAACACCAGUGUACCACAGAUUAGGUA 5' |
-22.60 | 18 | RIC-seq |
| chrX:139865589:139865611:[+] | chr6:56324943:56324990:[-] | nonBSJ supported | CDS |
circRNA 5': GGAAAAU----------------------CCAC-GUCUUCCA-GGAA 3' ||| |||| |||:||| :|| target 3':GCCUGAGACCGUCGACGUCAACAAUAGUUCGGUGACAGGAGGGGUCUC 5' |
-19.00 | 1 | RIC-seq |
| chrX:139865655:139865666:[+] | chr6:56462778:56462789:[-] | nonBSJ supported | CDS |
circRNA 5':AUCUUCCAGCUA 3' |||||||||| target 3':GAGAAGGUCGAC 5' |
-17.30 | 32 | RIC-seq |
| chrX:139865741:139865771:[+] | chr6:56479260:56479284:[-] | nonBSJ supported | CDS |
circRNA 5':AUCUAGAUCUUCCAGUCAAUCAGUGUCUUCC 3' ||| ||||| || ||||| |||| target 3':AAGAAA-AGAAGA--AG---GUCACUGAAGA 5' |
-16.20 | 1 | RIC-seq |
| chrX:139865741:139865774:[+] | chr6:56489328:56489363:[-] | nonBSJ supported | CDS |
circRNA 5':AUCUAGAUCUUCCAGUCAA-UCAGUGUCUU-CCAGA 3' ||: ||||||||:| |||:|| |||| target 3':GAGGAGGAGAAGGUCGGAGAAGUUACUUAGUGGUCG 5' |
-29.90 | 21 | RIC-seq |
| chrX:139865742:139865774:[+] | chr6:56489330:56489363:[-] | nonBSJ supported | CDS |
circRNA 5':UCUAGAUCUUCCAGUCAA-UCAGUGUCUU-CCAGA 3' || ||||||||:| |||:|| |||| target 3':GGAGG-AGAAGGUCGGAGAAGUUACUUAGUGGUCG 5' |
-28.70 | 1 | RIC-seq |
| chrX:139865747:139865774:[+] | chr6:56489334:56489363:[-] | nonBSJ supported | CDS |
circRNA 5':AUCUUCCAGUCAA-UCAGUGUCUU-CCAGA 3' ||||||||:| |||:|| |||| target 3':GAGAAGGUCGGAGAAGUUACUUAGUGGUCG 5' |
-27.80 | 1 | RIC-seq |
| chrX:139865757:139865788:[+] | chr6:56358872:56358911:[-] | nonBSJ supported | CDS |
circRNA 5': CAAUCAGUGUCUUC-CAGAAAGAA---AUC---CAGGUC 3' |||| |||||: |||| ||| ||:|: target 3':AGUUAUAAACAGAGACGUCUAAAACCCGUAGAACGUUCGU 5' |
-14.80 | 1 | RIC-seq |
| chrX:139865786:139865827:[+] | chr6:56358864:56358911:[-] | nonBSJ supported | CDS |
circRNA 5': GUCUUCCAGUCAAUCAGUGUCUUC-CAGAAAGAA---AUC---CAGGUC 3' ||||| |||||| |||||: |||| ||| ||:|: target 3':ACAGAAC--CAGUUAUAAACAGAGACGUCUAAAACCCGUAGAACGUUCGU 5' |
-24.60 | 10 | RIC-seq |
| chrX:139865786:139865850:[+] | chr6:56358864:56358926:[-] | nonBSJ supported | CDS |
circRNA 5': GUCUUCCAGUCAAUCAGUGUCUUC-CAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGU--GUCUUCCA 3' ||||| |||||| |||||: |||| :|||| ||: :|| |: |:||| | target 3':ACAGAAC--CAGUUAUAAACAGAGACGUCUAAAACCCG---UAGAACGUUCG-UAGACGACCGGAAAGA 5' |
-31.40 | 10 | RIC-seq |
| chrX:139865793:139865850:[+] | chr6:56358870:56358926:[-] | nonBSJ supported | CDS |
circRNA 5':AGUCAAUCAGUGUCUUC-CAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGU--GUCUUCCA 3' |||||| |||||: |||| :|||| ||: :|| |: |:||| | target 3':CCAGUUAUAAACAGAGACGUCUAAAACCCG---UAGAACGUUCG-UAGACGACCGGAAAGA 5' |
-26.10 | 1 | RIC-seq |
| chrX:139865861:139865872:[+] | chr6:56401589:56401600:[-] | nonBSJ supported | CDS |
circRNA 5':CGUCUUCCACCA 3' |||||||||| target 3':UCAGAAGGUGGC 5' |
-19.70 | 6 | RIC-seq |
| chrX:139866201:139866234:[+] | chr6:56350220:56350258:[-] | nonBSJ supported | CDS |
circRNA 5':AAUCC--GGGUCUUCCAGGAAAUCC----GUGUCUUCCAG 3' ||| |::| |||||:|||| |: ||:|||| target 3':GUAGACACUUAACAGGUCUUUUAUUGUCCCGAAGGAGGU 5' |
-23.00 | 11 | RIC-seq |
| chrX:139866386:139866435:[+] | chr6:56472693:56472740:[-] | nonBSJ supported | CDS |
circRNA 5':AUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGU-GUCUUCCAACAA 3' ||| |||||||||||| ||: |||||| |: || |: |||||| target 3': ACA-AAGGUAGUUUAAG-ACGUACUGUCGGAAGGUCAUCGUACGGUUGUC 5' |
-38.40 | 3 | RIC-seq |
| chrX:139866386:139866446:[+] | chr6:56472693:56472743:[-] | nonBSJ supported | CDS |
circRNA 5':AUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGU-GUCUUCCAACAAAGGUACGUCUU 3' ||| |||||||||||| ||: |||||| |: || |: |||||| |:|| target 3': ACA-AAGGUAGUUUAAG-ACGUACUGUCGGAAGGUCAUCGUACGGUUGU-------CGGA 5' |
-38.50 | 13 | RIC-seq |
| chrX:139866390:139866435:[+] | chr6:56472695:56472740:[-] | nonBSJ supported | CDS |
circRNA 5':CUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGU-GUCUUCCAACAA 3' |||||||||||| ||: |||||| |: || |: |||||| target 3':AAAGGUAGUUUAAG-ACGUACUGUCGGAAGGUCAUCGUACGGUUGUC 5' |
-37.70 | 1 | RIC-seq |
| chrX:139866620:139866647:[+] | chr6:56357030:56357064:[-] | nonBSJ supported | CDS |
circRNA 5':AGGU---CUUCCA-GCAUC-UCCAGGG--CUUCCA 3' ||: ||||| ||||| ||||::| ||||| target 3':ACCGAGAGAAGGAACGUAGUAGGUUUCUAGAAGGA 5' |
-31.60 | 2 | RIC-seq |
| chrX:139866639:139866655:[+] | chr6:56357098:56357113:[-] | nonBSJ supported | CDS |
circRNA 5':GGGCUUCCAGCAUCUGC 3' |:||| :|| ||| target 3':GCUGAAACAUGU-GACU 5' |
-8.80 | 2 | RIC-seq |
| chrX:139866732:139866771:[+] | chr6:56371278:56371313:[-] | nonBSJ supported | CDS |
circRNA 5':UCUUCCAUCAACUGGCUCAAUAUCCAUGUC-UUCCAACGUC 3' |:||| |||| ||| |||| ||| |||||| |: target 3':CGGAGG-AGUUCAAACAGU--UAGGC-CAGAAAGGUU-CGA 5' |
-23.30 | 31 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr6:56489328:56489363:[-] | target | 2952494 | chr6:56489332-56489333 | TC>T | Epidermolysis_bullosa_simplex_3,_localized_or_generalized_intermediate,_with_BP230_deficiency|Hereditary_sensory_and_autonomic_neuropathy_type_6 | ClinVar |
| chr6:56489330:56489363:[-] | target | 2952494 | chr6:56489332-56489333 | TC>T | Epidermolysis_bullosa_simplex_3,_localized_or_generalized_intermediate,_with_BP230_deficiency|Hereditary_sensory_and_autonomic_neuropathy_type_6 | ClinVar |
| chr6:56357098:56357113:[-] | target | - | chr6:56357105-56357106 | G>T | LICA-CN | ICGC |
| chr6:56401589:56401600:[-] | target | - | chr6:56401593-56401594 | T>C | LINC-JP | ICGC |