Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866436:139866457:[+] chr6:56323116:56323140:[-] nonBSJ supported 3UTR

circRNA 5':AGGUAC-GUCUUC-CAA-CAAAGGU 3'


            | ||| |||: | ||| ||||:|


target  3':ACGAUGACAGGUGAGUUCGUUUUCU 5'

 -15.10 2 RIC-seq
chrX:139866453:139866474:[+] chr6:56323112:56323134:[-] nonBSJ supported 3UTR

circRNA 5':AAGGUACGUCU-UCCAACAAAGG 3'


            |||| | || |||| |||


target  3':GUCCACGAUGACAGGUGAGUUCG 5'

 -11.80 1 RIC-seq
chrX:139866454:139866473:[+] chr6:56323116:56323137:[-] nonBSJ supported 3UTR

circRNA 5':AGGUAC-GUCUUC-CAA-CAAAG 3'


            | ||| |||: | ||| ||||


target  3':ACGAUGACAGGUGAGUUCGUUU 5'

 -12.00 1 RIC-seq
chrX:139866704:139866720:[+] chr6:56323345:56323361:[-] nonBSJ supported 3UTR

circRNA 5':AUCUUCAUGUCUUCCAA 3'


            |||| |||||||||


target  3':CAGAAAAACAGAAGGUA 5'

 -16.90 2 RIC-seq
chrX:139865379:139865407:[+] chr6:56376022:56376052:[-] nonBSJ supported CDS

circRNA 5':CCGG-GUCUUCCAGCGA-CUUCAA---GUCUUCC 3'


            |:| |:| ||||: ||| :|||||


target  3': GUCACGGU--GUCGUGCGAAAAACUGUAGAAGA 5'

 -15.50 2 RIC-seq
chrX:139865530:139865537:[+] chr6:56475329:56475336:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGC 3'


            |||||:


target  3':AAAGGUUA 5'

 -5.80 1 RIC-seq
chrX:139865559:139865571:[+] chr6:56371297:56371310:[-] nonBSJ supported CDS

circRNA 5':ACUGGUC-UUCCAC 3'


            |:|||| |||||


target  3':AGGCCAGAAAGGUU 5'

 -15.60 2 RIC-seq
chrX:139865762:139865812:[+] chr6:56366329:56366371:[-] nonBSJ supported CDS

circRNA 5':AGUGUCU-UCCAGAAAGAAAUCCAGGUC-UUCCA-GUCAA--UCAGUGUCUUCCAG 3'


            | ||| ||| ||||||: |:||| :|||| ||||| ||||


target  3':ACUAAGAGAGG---------AGGUCCGAUAGGGUAUAGUUAAAGUCA----AGGUA 5'

 -31.10 1 RIC-seq
chrX:139866205:139866249:[+] chr6:56510744:56510794:[-] nonBSJ supported CDS

circRNA 5':CGGGUCUU--CC----AGGAAAUCCGUGUCUUCCAGCAA--GUCCACGUCUUC 3'


            ||:| || |||| | :||: ||||: :|||| :||||


target  3':ACCUACUAUUGGAACUUCCUCGAACUACGC-AGGUUUAAGAUAGGUUUAGAA 5'

 -22.80 1 RIC-seq
chrX:139866220:139866283:[+] chr6:56510732:56510794:[-] nonBSJ supported CDS

circRNA 5':AUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAACAAAGCC--AUGUCUUCCAGA--CUAUCCAUGUCU 3'


            || :|||| :||| ||| |||: ||||:| ||||||| :|||


target  3':AAGAUACAGUAAACCUACUAUU---GGAACUUCC--UCGAACUACGC-AGGUUUAAGAUAGGUUUAGAA 5'

 -26.40 1 RIC-seq
chrX:139866349:139866381:[+] chr6:56330911:56330935:[-] nonBSJ supported CDS

circRNA 5':CGUGUCUUCCAGCAAAUCCACGUCUUCCAACAA 3'


            |||:| |||| ||||| :|||||||


target  3':UCACGGUAGGU-----AGGUG---GAGGUUGUG 5'

 -27.80 2 RIC-seq
chrX:139866706:139866722:[+] chr6:56376174:56376188:[-] nonBSJ supported CDS

circRNA 5':CUUCAUGUCUUCCAACA 3'


            |||| | || ||||


target  3':CAAGU-C-GAUAGUUGA 5'

 -7.20 1 RIC-seq
chrX:139866708:139866749:[+] chr6:56347531:56347601:[-] nonBSJ supported CDS

circRNA 5':UCAU-GUCUUCCA-------------------------ACAACUACCC------AGUCUUCCAUCAACUGGCUC 3'


            ||: ||||:||| || |||| |||| ||| |||| ||


target  3':UGUGCCAGAGGGUCGCACACGAAUUAAGGACGUAGACCUGGAACUGGGUCCUCCUCAGUAGGGC--UGACGGA 5'

 -28.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:56330911:56330935:[-] target 2016788 chr6:56330920-56330921 C>T Epidermolysis_bullosa_simplex_3,_localized_or_generalized_intermediate,_with_BP230_deficiency|Hereditary_sensory_and_autonomic_neuropathy_type_6 ClinVar