Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865557:139865593:[+] chr5:50057704:50057735:[+] nonBSJ supported 5UTR

circRNA 5':UUACUGGUCUUCCACCAAAUCCAGAUCUUCCAGGAAA 3'


            |||: |:|:||| ||||| ||||


target  3': AUGGACGGGAGGCAUUAUUUUA--AGAAG--CCUUA 5'

 -19.00 15 RIC-seq
chrX:139865557:139865593:[+] chr5:50057705:50057735:[+] nonBSJ supported 5UTR

circRNA 5':UUACUGGUCUUCCACCAAAUCCAGAUCUUCCAGGAAA 3'


            |||: |:|:||| ||||| ||||


target  3': AUGGACGGGAGGCAUUAUUUUA--AGAAG--CCUU 5'

 -19.00 1 RIC-seq
chrX:139865564:139865593:[+] chr5:50057704:50057729:[+] nonBSJ supported 5UTR

circRNA 5':UCUUCCACCAAAUCCAGAUCUUCCAGGAAA 3'


            |:||| ||||| ||||


target  3':GGGAGGCAUUAUUUUA--AGAAG--CCUUA 5'

 -12.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:50057704:50057729:[+] target - chr5:50057723-50057724 C>T PACA-CA ICGC
chr5:50057704:50057735:[+] target - chr5:50057723-50057724 C>T PACA-CA ICGC
chr5:50057705:50057735:[+] target - chr5:50057723-50057724 C>T PACA-CA ICGC