Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865887:139865913:[+] chr13:23905150:23905180:[-] nonBSJ supported CDS

circRNA 5': AGUCAAUCCACA-UCUU--CCGGAAAAAAU 3'


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target  3':UUCAGAACACCGAGAGAGAUGGUCUCUUUUC 5'

 -11.60 23 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr13:23905150:23905180:[-] target 2678587 chr13:23905154-23905155 CT>C Charlevoix-Saguenay_spastic_ataxia ClinVar
chr13:23905150:23905180:[-] target 189014 chr13:23905160-23905161 GCTCT>G Spastic_paraplegia|Charlevoix-Saguenay_spastic_ataxia ClinVar
chr13:23905150:23905180:[-] target 3644466 chr13:23905169-23905170 AC>A Spastic_paraplegia ClinVar
chr13:23905150:23905180:[-] target 2853564 chr13:23905171-23905172 CAGAGA>C Spastic_paraplegia ClinVar
chr13:23905150:23905180:[-] target 558550 chr13:23905178-23905179 AAG>A Spastic_paraplegia|Charlevoix-Saguenay_spastic_ataxia ClinVar
chrX:139865887:139865913:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC