Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865782:139865809:[+] chr4:17488548:17488573:[-] nonBSJ supported 3UTR

circRNA 5':CCAGGUCUUCCAGUCAAUCAGUGUCUUC 3'


            ||||:| |||||| :||||||


target  3':CGUCCGGU-GGUCAGAGCG-UACAGAAA 5'

 -27.30 3 RIC-seq
chrX:139865821:139865848:[+] chr4:17488548:17488573:[-] nonBSJ supported 3UTR

circRNA 5':CCAGGUCUUCCAGUCA-GUCAGUGUCUUC 3'


            ||||:| |||||| |: :||||||


target  3':CGUCCGGU-GGUCAGAGCG--UACAGAAA 5'

 -27.60 28 RIC-seq
chrX:139866403:139866440:[+] chr4:17503434:17503465:[-] nonBSJ supported CDS

circRNA 5':AAUGUCUUCCAGCCUACUUGUGUCUUCCAACAAAGGUA 3'


            |||||: || | || |||||| ||||


target  3':CUACAGGUAUACG-----AGAC-GAAGGUGUAGUCCAG 5'

 -22.00 29 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:17503434:17503465:[-] target 3068244 chr4:17503434-17503435 G>C Dihydropteridine_reductase_deficiency ClinVar
chr4:17503434:17503465:[-] target 2910183 chr4:17503450-17503451 G>A Dihydropteridine_reductase_deficiency ClinVar
chr4:17503434:17503465:[-] target 491 chr4:17503456-17503457 A>C Dihydropteridine_reductase_deficiency ClinVar
chr4:17488548:17488573:[-] target - chr4:17488549-17488550 C>A EOPC-DE ICGC