Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865596:139865625:[+] chr4:129867253:129867279:[-] nonBSJ supported CDS

circRNA 5':CCACGUCUUCCAGGAAAUCCAUGUCUUC-CA 3'


            || |||||||| || ||| || |


target  3':CGUAAAGAAGGUCAAA-AG--ACAUUAGUG 5'

 -15.20 5 RIC-seq
chrX:139866473:139866514:[+] chr4:129920891:129920934:[-] nonBSJ supported CDS

circRNA 5':GGUAUGUCU-UCCAACAA---AGGUAC-GUCUUCCAGAAAAUCCACG 3'


            ||| |||| |||||| ||: || |||| ||||| |||||


target  3':ACAU-CAGACAGGUUGAGGACUCUUUGUCAGACGGUCUCA-AGGUG 5'

 -35.10 1 RIC-seq
chrX:139866473:139866518:[+] chr4:129920891:129920940:[-] nonBSJ supported CDS

circRNA 5':GGUAUGUCU-UCCAACAA---AGGUAC-GUCUUCCAGAAAAUCCAC-GUCUU 3'


            ||| |||| |||||| ||: || |||| ||||| ||||| |:||


target  3':ACAU-CAGACAGGUUGAGGACUCUUUGUCAGACGGUCUCA-AGGUGUCGGAC 5'

 -38.20 23 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:129920891:129920940:[-] target - chr4:129920939-129920940 T>A LICA-CN ICGC