Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865673:139865701:[+] chr14:33205029:33205052:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAAUCUGUGUCUUCCACC 3'


            |||||| ||| |||||: ||


target  3':AGGAAGGAAA----AGA-ACAGAGUCUGU 5'

 -12.70 1 RIC-seq
chrX:139865688:139865719:[+] chr14:33205027:33205056:[+] nonBSJ supported CDS

circRNA 5':CUGUGUCUUCCACCAAAUCCAAGUCUUC--CAGU 3'


            ||| :||||| || ||||: |||


target  3':AACAAGGAAGGAAA---AGAA-CAGAGUCUGUCC 5'

 -14.10 24 RIC-seq
chrX:139865688:139865732:[+] chr14:33205006:33205055:[+] nonBSJ supported CDS

circRNA 5':CUGUGUCUUCCACCAAAUCCAAGUCUUC--CAGUAAAUCU--------AGUUCUU 3'


            ||| :||||| || ||||: ||| ||:|||


target  3': ACAAGGAAGGAAA---AGAA-CAGAGUCUGUCCUUAACUUCUACUUUUCGAGAC 5'

 -15.50 1 RIC-seq
chrX:139865688:139865732:[+] chr14:33205006:33205056:[+] nonBSJ supported CDS

circRNA 5':CUGUGUCUUCCACCAAAUCCAAGUCUUC--CAGUAAAUCU--------AGUUCUU 3'


            ||| :||||| || ||||: ||| ||:|||


target  3':AACAAGGAAGGAAA---AGAA-CAGAGUCUGUCCUUAACUUCUACUUUUCGAGAC 5'

 -16.40 23 RIC-seq
chrX:139865741:139865798:[+] chr14:32902911:32902957:[+] nonBSJ supported CDS

circRNA 5':AUCUA-GAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAA 3'


            ||| ||:|:|| || || ||| ||| || ||||||||: |||


target  3':CAGAGCCUGGGAG---AGAC--UC-CAGUAGGCCUC------GGUCCAGAGUUAAAGUC 5'

 -31.70 30 RIC-seq
chrX:139865751:139865798:[+] chr14:32902911:32902948:[+] nonBSJ supported CDS

circRNA 5':UCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAA 3'


            || || || ||| ||| || ||||||||: |||


target  3': GGAGAGAC--UC-CAGUAGGCCUC------GGUCCAGAGUUAAAGUC 5'

 -25.50 1 RIC-seq