Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866256:139866284:[+] chr3:25805691:25805716:[-] nonBSJ supported CDS

circRNA 5':AGCCAUGUCUUCCA-GA-CUAUCCAUGUCUU 3'


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target  3':CCG----AGAAUAAACUCGGUAGGU-CAGAC 5'

 -16.10 1 RIC-seq
chrX:139866294:139866338:[+] chr3:25805679:25805716:[-] nonBSJ supported CDS

circRNA 5':CCUUGUCUUCC---CUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUU 3'


            ||| ||| ||| |||: ||||| ||||


target  3':UGAAAUGAAACACCGAGAAUAAAC-UCGG--------UAGGU-CAGAC 5'

 -14.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:25805679:25805716:[-] target 221579 chr3:25805702-25805703 G>C Congenital_disorder_of_deglycosylation ClinVar
chr3:25805691:25805716:[-] target 221579 chr3:25805702-25805703 G>C Congenital_disorder_of_deglycosylation ClinVar
chrX:139866294:139866338:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC