Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866349:139866377:[+] chr4:176920937:176920970:[-] nonBSJ supported Intron

circRNA 5':CGUGUCUUCCAGCAAA-UCC-ACGUC----UUCCA 3'


            |:|: ||||||| ||| |||: ||||


target  3':CCGCGUUAGGUCGUAAGAGGAUGCGACAAAAAGG 5'

 -27.80 1 RIC-seq
chrX:139866349:139866377:[+] chr4:176920937:176920971:[-] nonBSJ supported Intron

circRNA 5':CGUGUCUUCCAGCAAA-UCC-ACGUC----UUCCA 3'


            |:|: ||||||| ||| |||: ||||


target  3':CCGCGUUAGGUCGUAAGAGGAUGCGACAAAAAGGG 5'

 -27.50 1 RIC-seq
chrX:139866599:139866664:[+] chr4:176800354:176800414:[-] nonBSJ supported Intron

circRNA 5':UCCAUGUCUUCCUAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGC-UUCCAGCAUCUGCUCGUCUUCC 3'


            |||||||||||| ||||| :| || ||:: |||||:| |||||: || |||


target  3':GGGUACAGAAGGACAAA-------AGAAGACUGGUGAAGUUUGACAAGGUUGGAGACGGACAACAGGU 5'

 -50.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:176800354:176800414:[-] target - chr4:176800356-176800357 C>T LAML-KR ICGC
chr4:176800354:176800414:[-] target - chr4:176800414-176800415 A>G LAML-KR ICGC
chr4:176920937:176920970:[-] target - chr4:176920960-176920961 G>A PRAD-CA ICGC
chr4:176920937:176920971:[-] target - chr4:176920960-176920961 G>A PRAD-CA ICGC