Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865586:139865614:[+] chr4:176561905:176561932:[-] nonBSJ supported CDS

circRNA 5':CCAGGAAAAUC-CACGUCUUCCAGGAAAUC 3'


            ||| || |||:||:| ||:|||||


target  3':AGUCAUCUAAGCGUGUAGGA-GUUCUUUA 5'

 -21.80 14 RIC-seq
chrX:139865588:139865606:[+] chr4:176561909:176561926:[-] nonBSJ supported CDS

circRNA 5':AGGAAAAUC-CACGUCUUCC 3'


            ||| || |||:||:||


target  3':AUCUA--AGCGUGUAGGAGU 5'

 -14.50 1 RIC-seq
chrX:139865588:139865614:[+] chr4:176561909:176561932:[-] nonBSJ supported CDS

circRNA 5':AGGAAAAUC-CACGUCUUCCAGGAAAUC 3'


            ||| || |||:||:| ||:|||||


target  3':AUCUA--AGCGUGUAGGA-GUUCUUUA 5'

 -19.60 12 RIC-seq
chrX:139865588:139865614:[+] chr4:176561910:176561932:[-] nonBSJ supported CDS

circRNA 5':AGGAAAAUC-CACGUCUUCCAGGAAAUC 3'


            ||| || |||:||:| ||:|||||


target  3': UCUA--AGCGUGUAGGA-GUUCUUUA 5'

 -18.90 1 RIC-seq
chrX:139865716:139865735:[+] chr4:176556107:176556123:[-] nonBSJ supported CDS

circRNA 5':CAGUAAAUCUAGUUCUUCCA 3'


            ||: ||| |:||||||


target  3':UUCG---AGAACGAGAAGGA 5'

 -15.40 17 RIC-seq
chrX:139865735:139865754:[+] chr4:176556105:176556123:[-] nonBSJ supported CDS

circRNA 5':AGAAAAAUCUAGAUCUUCCA 3'


            ||| ||| | ||||||


target  3':ACUUCG-AGAACGAGAAGGA 5'

 -12.50 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:176556105:176556123:[-] target - chr4:176556115-176556116 G>T LICA-CN ICGC
chr4:176556107:176556123:[-] target - chr4:176556115-176556116 G>T LICA-CN ICGC