Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865423:139865484:[+] chr10:33214799:33214844:[-] nonBSJ supported CDS

circRNA 5':UUCCAGAUAAUCCUG-AGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUCCGGAC 3'


            |||| | ||| |:||| || |||| || |||: |||| |||


target  3': AGGUGUUU---GACGUUGAACGUACUACC---GUAG-----CUUU--GGUG--GAAGACCU 5'

 -20.30 1 RIC-seq
chrX:139865450:139865490:[+] chr10:33214799:33214837:[-] nonBSJ supported CDS

circRNA 5':AUCCACAUCUUCCAGACAAUCCAUGUCUUC--CGGACAAUCCA 3'


            |||||| :|| |||| ||:| ||


target  3': AGGUGUUUGACG-UUGAAC-GUACUACCGUAGCUUUGGUGG 5'

 -15.20 1 RIC-seq
chrX:139865823:139865860:[+] chr10:33218869:33218908:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAA--AAUCUA 3'


            ||:||: || :|||| || || ||:|:


target  3':CUCGGAGACCCUAAAAGAUACAGUAGACCUCCCGUUGGGA 5'

 -16.00 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:33214799:33214837:[-] target - chr10:33214802-33214803 A>G LICA-CN ICGC
chr10:33214799:33214837:[-] target - chr10:33214823-33214824 G>T LICA-CN ICGC
chr10:33214799:33214844:[-] target - chr10:33214802-33214803 A>G LICA-CN ICGC
chr10:33214799:33214844:[-] target - chr10:33214823-33214824 G>T LICA-CN ICGC