Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865761:139865801:[+]	chr11:64888208:64888246:[-]	nonBSJ supported	CDS	circRNA 5':CAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCA-AUCA 3' \|\|:\|:\| \|\|\|\| \|:\| \|\|:\| \|:\| target 3':UUCGCGGCCAACAUGACG-UAGG--CGGCGAAUCGGGCUGGA 5'	-15.90	1	RIC-seq
chrX:139865761:139865831:[+]	chr11:64888208:64888280:[-]	nonBSJ supported	CDS	circRNA 5':CAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAA--UCCA----GGUCUUCC 3' \|\|:\|:\| \|\|\|\| \|:\| \|\|:\| \|\|\|\|\|\|\| \|\|\| \|\|:\| \|\| target 3':UUCGCGGCCAACAUGACG-UAGG--CGGCGAAUCGGGCUGG-ACAGAAGAAGAAGAAGAAGAGGACAAACCGGU-GGA 5'	-29.70	1	RIC-seq
chrX:139865761:139865832:[+]	chr11:64888208:64888280:[-]	nonBSJ supported	CDS	circRNA 5':CAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAA--UCCA----GGUCUUCCA 3' \|\|:\|:\| \|\|\|\| \|:\| \|\|:\| \|\|\|\|\|\|\| \|\|\| \|\|:\| \|\| target 3':UUCGCGGCCAACAUGACG-UAGG--CGGCGAAUCGGGCUGG-ACAGAAGAAGAAGAAGAAGAGGACAAACCGGU-GGA 5'	-31.00	22	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr11:64888208:64888280:[-]	target	-	chr11:64888252-64888253	C>T	PACA-CA	ICGC
chr11:64888208:64888280:[-]	target	-	chr11:64888255-64888256	C>T	PACA-CA	ICGC
chr11:64888208:64888280:[-]	target	-	chr11:64888261-64888262	C>T	PACA-CA	ICGC