Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866332:139866359:[+] chr11:118416846:118416876:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGGAAAUCCGUGUCU---UCCA 3'


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target  3':ACCAGAAGGGAGACAAUACGCAGAAACAGGA 5'

 -25.30 36 RIC-seq
chrX:139866299:139866340:[+] chr11:118416839:118416872:[+] nonBSJ supported CDS

circRNA 5':UCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCC 3'


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target  3': GAAGGGAGACAAUA---CGCAGAAAC---AGGACUA-AAGA 5'

 -16.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866299:139866340:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC