Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866619:139866679:[+] chr11:61570628:61570684:[-] nonBSJ supported Intron

circRNA 5':CAGGUCU-UCCAGCA-UCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCAC-GUCU 3'


            |||:| :|||||| |||||||| ||| ||| |||| || |||


target  3':UUCCGGUCGGGUCGUAAGAGGUCCAUU---UCGAC--CGACUCCUUCCCUGUACUC-UGACAG 5'

 -40.00 1 RIC-seq
chrX:139866619:139866681:[+] chr11:61570628:61570687:[-] nonBSJ supported Intron

circRNA 5':CAGGUCU-UCCAGCA-UCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCAC-GUCUUC 3'


            |||:| :|||||| |||||||| ||| ||| |||| || |||||


target  3':UUCCGGUCGGGUCGUAAGAGGUCCAUU---UCGAC--CGACUCCUUCCCUGUACUC-UGACAGAAC 5'

 -41.90 1 RIC-seq