Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866605:139866645:[+] chr11:118916504:118916539:[-] nonBSJ supported CDS

circRNA 5':UCUUCCUAUAUCUCC--AGGUCUUCCAGCAUCUCCAGGGCUUC 3'


            |:||||| |||| ||| || ||| ||||| ||||:


target  3': GGAGGAUU--GAGGUUUCC-GA--GUCACAGAGGA-CCGAGC 5'

 -35.00 6 RIC-seq
chrX:139866605:139866647:[+] chr11:118916504:118916545:[-] nonBSJ supported CDS

circRNA 5':UCUUCCUAUAUCUCC--AGGUCUUCCAGCAUCUCCAGGGCU----UCCA 3'


            |:||||| |||| ||| || ||| ||||| |||| |||


target  3': GGAGGAUU--GAGGUUUCC-GA--GUCACAGAGGA-CCGAGCCUAGGA 5'

 -36.20 6 RIC-seq
chrX:139866607:139866645:[+] chr11:118916504:118916539:[-] nonBSJ supported CDS

circRNA 5': UUCCUAUAUCUCC--AGGUCUUCCAGCAUCUCCAGGGCUUC 3'


            |||||| |||| ||| || ||| ||||| ||||:


target  3':GGAGGAUU--GAGGUUUCC-GA--GUCACAGAGGA-CCGAGC 5'

 -33.10 1 RIC-seq