Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865811:139865871:[+] chr10:31750030:31750093:[+] nonBSJ supported CDS

circRNA 5':AGAAAGAA-AUCCA--GGU----CUUC-CAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCACC 3'


            | || |||| ||| |||| |||||||: |::||| ||| ||||||||


target  3':ACCGUCCAGUAGGAGACCAUGUGGAAGUGUCAGUCGA-CGUAGACAUUGUGAA-AGA---AGAAGGUGU 5'

 -39.20 16 RIC-seq
chrX:139865826:139865871:[+] chr10:31750030:31750070:[+] nonBSJ supported CDS

circRNA 5':UCUUC-CAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCACC 3'


            |||| |||||||: |::||| ||| ||||||||


target  3': GAAGUGUCAGUCGA-CGUAGACAUUGUGAA-AGA---AGAAGGUGU 5'

 -32.80 3 RIC-seq
chrX:139865826:139865871:[+] chr10:31750030:31750071:[+] nonBSJ supported CDS

circRNA 5':UCUUC-CAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCACC 3'


            |||| |||||||: |::||| ||| ||||||||


target  3':GGAAGUGUCAGUCGA-CGUAGACAUUGUGAA-AGA---AGAAGGUGU 5'

 -34.20 12 RIC-seq
chrX:139865840:139865871:[+] chr10:31750030:31750057:[+] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCAGAAAAAUCUACGUCUUCCACC 3'


            |::||| ||| ||||||||


target  3':ACGUAGACAUUGUGAA-AGA---AGAAGGUGU 5'

 -16.80 1 RIC-seq
chrX:139865841:139865871:[+] chr10:31750030:31750077:[+] nonBSJ supported CDS

circRNA 5': GUG--UCUUC-----CAGAAAAAUCU---ACG------UCUUCCACC 3'


            ||: :|||| ||| |||| ||: ||||||||


target  3':CCAUGUGGAAGUGUCAGUCGACGUAGACAUUGUGAAAGAAGAAGGUGU 5'

 -17.80 1 RIC-seq
chrX:139865848:139865871:[+] chr10:31750030:31750062:[+] nonBSJ supported CDS

circRNA 5':CCAGAAAAAUCU---ACG------UCUUCCACC 3'


            ||| |||| ||: ||||||||


target  3':AGUCGACGUAGACAUUGUGAAAGAAGAAGGUGU 5'

 -16.20 1 RIC-seq
chrX:139866460:139866480:[+] chr10:31750023:31750039:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAAAGGUAUGUC 3'


            |||||| ||| :||||:


target  3':AAGAAGG-UGU---UAUACGU 5'

 -14.10 1 RIC-seq
chrX:139866460:139866481:[+] chr10:31750016:31750039:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAAA---GGUAUGUCU 3'


            ||||||| :|| ||||


target  3':AAGAAGGUGUUAUACGUCAAACAG 5'

 -15.50 51 RIC-seq