Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866490:139866507:[+] chr9:124074610:124074626:[+] nonBSJ supported 5UTR

circRNA 5':AGGUACGUCUUCCAGAAA 3'


            ||| :| ||| |||


target  3': CCACCUACAAGACCUUC 5'

 -4.30 2 RIC-seq
chrX:139866529:139866542:[+] chr9:124074608:124074622:[+] nonBSJ supported 5UTR

circRNA 5':CAUG-UCUUCCAGAA 3'


            ||| ||| |||


target  3':CUACAAGACCUUCUG 5'

 -3.50 1 RIC-seq
chrX:139865829:139865853:[+] chr9:124079487:124079511:[+] nonBSJ supported Intron

circRNA 5':UCCAGUCAGUCAGUGUC-UUCCAGAA 3'


            || ||| :||||::| |||||||


target  3':GGGACAGA-GGUCAUGGAAAGGUCUG 5'

 -23.20 21 RIC-seq
chrX:139865875:139865908:[+] chr9:124079487:124079510:[+] nonBSJ supported Intron

circRNA 5':UCCAGGUCUUCCAGUCAAUCCACAUC-UUCCGGAA 3'


            || ||| |||||| |:| ||||:||


target  3': GGA-CAG-AGGUCA--------UGGAAAGGUCUG 5'

 -21.50 1 RIC-seq
chrX:139865879:139865908:[+] chr9:124079487:124079508:[+] nonBSJ supported Intron

circRNA 5':GGUCUUCCAGUCAAUCCACAUC-UUCCGGAA 3'


            ||| |||||| |:| ||||:||


target  3':ACAG-AGGUCA--------UGGAAAGGUCUG 5'

 -20.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865875:139865908:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865879:139865908:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC