Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865901:139865909:[+] chr8:38126480:38126487:[-] nonBSJ supported 5UTR

circRNA 5':UUCCGGAAA 3'


            || ||||


target  3': AGACCUUG 5'

 -4.40 1 RIC-seq
chrX:139865895:139865907:[+] chr8:38125175:38125187:[-] nonBSJ supported Intron

circRNA 5':CACAUCUUCCGGA 3'


            |||: |||:


target  3':CUGUGACUGGCUG 5'

 -7.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865895:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865901:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC