Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865988:139866016:[+] chrX:73753306:73753337:[+] nonBSJ supported 3UTR

circRNA 5':AUGUC-UUCCAGUAACCUCCCA-GUCU-UCCA 3'


            ||| :||||||| || |||| |||


target  3':AACAACGAGGUCAUAAAAGUCACCAGAGAGGA 5'

 -18.10 2 RIC-seq
chrX:139866099:139866139:[+] chrX:73745621:73745670:[+] nonBSJ supported CDS

circRNA 5': GUCUU---CCAGAAAA---UCC---ACAUCUUCCAAUGGCCUCCAGGUCU 3'


            |:|: || || :|| |||: |||| :|| :||||||||


target  3':GCGGGUUCCGGACUCCAUCGGGGUUAUGUGU--GGUUCUCGUGGGUCCAGAG 5'

 -30.80 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:73745621:73745670:[+] target 1031649 chrX:73745628-73745629 G>A Allan-Herndon-Dudley_syndrome ClinVar
chrX:73745621:73745670:[+] target 11639 chrX:73745637-73745638 T>G Allan-Herndon-Dudley_syndrome ClinVar
chrX:73745621:73745670:[+] target 159902 chrX:73745669-73745670 C>T Hereditary_spastic_paraplegia|Spastic_paraplegia|Allan-Herndon-Dudley_syndrome|not_provided|Inborn_genetic_diseases ClinVar
chrX:73745621:73745670:[+] target - chrX:73745624-73745625 A>T BTCA-JP ICGC