Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865780:139865808:[+] chr7:75696545:75696570:[+] nonBSJ supported 3UTR

circRNA 5':AUCCAGGUCUUCCA--GUCAAUCAGUGUCUU 3'


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target  3':AAGGU---GAAGUCUCCGGU--GUCACAGAC 5'

 -20.60 2 RIC-seq
chrX:139865878:139865898:[+] chr7:75692869:75692890:[+] nonBSJ supported CDS

circRNA 5':AGGUCUU-CCAGUCAAUCCACA 3'


            |||||| ||||: ||||


target  3':ACCAGAAGGGUCGUACCGGUGG 5'

 -22.90 1 RIC-seq
chrX:139865887:139865906:[+] chr7:75692867:75692889:[+] nonBSJ supported CDS

circRNA 5':AGUCAAUCCA-CAU--CUUCCGG 3'


            ||| :||| ||| |: ||:


target  3':CCAGAAGGGUCGUACCGGUGGUU 5'

 -10.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:75692867:75692889:[+] target 266121 chr7:75692871-75692872 TG>T Developmental_and_epileptic_encephalopathy,_51|Infantile_encephalopathy ClinVar
chr7:75692869:75692890:[+] target 266121 chr7:75692871-75692872 TG>T Developmental_and_epileptic_encephalopathy,_51|Infantile_encephalopathy ClinVar
chrX:139865887:139865906:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC