Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866166:139866207:[+] chr7:44507600:44507648:[+] nonBSJ supported Exon

circRNA 5':AUCCUUG--UCUUC------CCUUAAA-UCUAUAGCUUCCAAAAAAUCCGG 3'


            |||||| ||||| ||:| || ||:|| ||||


target  3':CGGGAACUUAGAAGAUGCUUGGGACAACAGUCA-CGGAGACCCAA-AGGCG 5'

 -22.10 1 RIC-seq
chrX:139866166:139866217:[+] chr7:44507596:44507648:[+] nonBSJ supported Exon

circRNA 5':AUCCUUG--UCUUC------CCUUAAA-UCUAUAGCUUCCAAAAAAUCCGGG--UCUUCCAGG 3'


            |||||| ||||| ||:| || ||:|| ||| ||: ||||


target  3':CGGGAACUUAGAAGAUGCUUGGGACAACAGUCA-CGGAGA---------CCCAAAGGCGGUCA 5'

 -26.80 20 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:44507596:44507648:[+] target - chr7:44507617-44507618 C>T LAML-KR ICGC
chr7:44507596:44507648:[+] target - chr7:44507639-44507640 A>G LICA-CN ICGC
chr7:44507600:44507648:[+] target - chr7:44507617-44507618 C>T LAML-KR ICGC
chr7:44507600:44507648:[+] target - chr7:44507639-44507640 A>G LICA-CN ICGC