Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865560:139865600:[+] chr6:79770234:79770278:[-] nonBSJ supported CDS

circRNA 5':CUGGUCUUCCAC----CAAAU---CCAGAUCUUCCAGGAAAA-UCCACG 3'


            ||||||||||| ||| ||||| |||: |||||


target  3':CACCAGAAGGUGUCACGUUGCGUCGGUCUC----GUCUAGGAAAGGUGU 5'

 -32.30 1 RIC-seq
chrX:139865560:139865620:[+] chr6:79770234:79770286:[-] nonBSJ supported CDS

circRNA 5':CUGGUCUUCCACCA---AAUCCAGAUCUUCCAG-GAAAAUCCACGUCUUCCAGGAAAUCCAUGUC 3'


            ||||||||||| ||: ||| |||| | |||| ||||| : ||||:


target  3':CACCAGAAGGUGUCACGUUGCGUC-----GGUCUCGUCUAGGA----AAGGUGUGUU--GUACG 5'

 -37.00 1 RIC-seq
chrX:139865560:139865620:[+] chr6:79770234:79770287:[-] nonBSJ supported CDS

circRNA 5':CUGGUCUUCCACCA---AAUCCAGAUCUUCCAG-GAAAAUCCACGUCUUCCAGGAAAUCCAUGUC 3'


            ||||||||||| ||: ||| |||| | |||| ||||| : ||||:


target  3':CACCAGAAGGUGUCACGUUGCGUC-----GGUCUCGUCUAGGA----AAGGUGUGUU--GUACGA 5'

 -37.60 12 RIC-seq
chrX:139866316:139866352:[+] chr6:79698020:79698058:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAA-UCCAGGUCUUCCAGGAAAU-C-CGUG 3'


            |||| ||||:| |||||||||| | |:||


target  3':ACGAAAAACCUAAGAGGUUCU--AGGUCCUUUACGAGUACU 5'

 -28.80 2 RIC-seq
chrX:139866411:139866435:[+] chr6:79724833:79724863:[-] nonBSJ supported CDS

circRNA 5': CCAG--CCUACUUGUGUC----UUCCAACAA 3'


            |||| ||:|| |:|| ||||| ||


target  3':CGGUCUAGGGUGUG-AUAGUGCAAAGGUAGUA 5'

 -17.90 4 RIC-seq
chrX:139866477:139866484:[+] chr6:79697951:79697959:[-] nonBSJ supported CDS

circRNA 5': UGUCUUCC 3'


            | |||||


target  3':UAGAGAAGA 5'

 -5.50 1 RIC-seq
chrX:139866479:139866502:[+] chr6:79697938:79697959:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAACAAAGGUACGUCUUCC 3'


            || ||| || |||||


target  3':UGACGGUAAAAG--AUAGAGAAGA 5'

 -7.90 1 RIC-seq
chrX:139866526:139866556:[+] chr6:79697940:79697959:[-] nonBSJ supported CDS

circRNA 5':AGCCAUG-UCUUCCAGAAAAUCCACGUCUUCC 3'


            ||||| ||| |||||


target  3':ACGGUAAAAGAUAG------------AGAAGA 5'

 -12.10 3 RIC-seq
chrX:139866526:139866574:[+] chr6:79697940:79697959:[-] nonBSJ supported CDS

circRNA 5':AGCCAUG-UCUUCCAGAAAAUCCACGUCUUCCAGAAAAUAUAUGUCUUCC 3'


            ||||| ||| || |||||


target  3':ACGGUAAAAGA------------------------------UAGAGAAGA 5'

 -12.70 43 RIC-seq
chrX:139866585:139866612:[+] chr6:79650710:79650724:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAUCCAUGUCUUCCUA 3'


            |||||| :|||||||


target  3':ACAGAAG------------UAGAAGGA 5'

 -16.60 7 RIC-seq
chrX:139866585:139866612:[+] chr6:79650710:79650725:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAUCCAUGUCUUCCUA 3'


            |||||| :|||||||


target  3':ACAGAAG------------UAGAAGGAA 5'

 -16.90 7 RIC-seq
chrX:139866633:139866686:[+] chr6:79707173:79707220:[-] nonBSJ supported CDS

circRNA 5':UCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCA 3'


            ||||| :||| |||| :|:|||| ||| |||| ||


target  3': GAGGU-UCGAUGGUCUAGGGCGAGACACCGAUAAA----GUGAAGAACCACGC 5'

 -32.70 10 RIC-seq
chrX:139866633:139866694:[+] chr6:79707173:79707227:[-] nonBSJ supported CDS

circRNA 5':UCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUG 3'


            ||||| :||| |||| :|:|||| ||| |||| || ||||


target  3': GAGGU-UCGAUGGUCUAGGGCGAGACACCGAUAAA----GUGAAGAACCACGCAACGACA 5'

 -35.50 6 RIC-seq
chrX:139866638:139866694:[+] chr6:79707176:79707227:[-] nonBSJ supported CDS

circRNA 5':AGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUG 3'


            |:||| |||| :|:|||| ||| |||| || ||||


target  3':GUUCGAUGGUCUAGGGCGAGACACCGAUAAA----GUGAAGAACCACGCAACGACA 5'

 -29.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:79698020:79698058:[-] target 2227896 chr6:79698022-79698023 CT>C Inborn_genetic_diseases ClinVar
chr6:79724833:79724863:[-] target 1695372 chr6:79724860-79724861 T>A PHIP-related_behavioral_problems-intellectual_disability-obesity-dysmorphic_features_syndrome ClinVar
chrX:139866316:139866352:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866585:139866612:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC