Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866268:139866306:[+] chr6:39871036:39871066:[+] nonBSJ supported 3UTR

circRNA 5': CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCU 3'


            ||| |: ||| ||:|||| |||:::|||:|||


target  3':AGUC-GGAAGG---AGGAGGU-----AGGGGUAGAGGGGU 5'

 -35.40 25 RIC-seq
chrX:139866268:139866314:[+] chr6:39871029:39871066:[+] nonBSJ supported 3UTR

circRNA 5': CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAAUCCA 3'


            ||| |: ||| ||:|||| |||:::|||:||| |||


target  3':AGUC-GGAAGG---AGGAGGU-----AGGGGUAGAGGGGUCAA-AGGG 5'

 -38.20 1 RIC-seq
chrX:139866268:139866314:[+] chr6:39871030:39871066:[+] nonBSJ supported 3UTR

circRNA 5': CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAAUCCA 3'


            ||| |: ||| ||:|||| |||:::|||:||| |||


target  3':AGUC-GGAAGG---AGGAGGU-----AGGGGUAGAGGGGUCAA-AGG 5'

 -38.50 2 RIC-seq