Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865864:139865892:[+] chr5:147796717:147796747:[+] nonBSJ supported CDS

circRNA 5':CUUCCACCAAAUCCAGGUCUU-CC---AGUCAA 3'


            |||| |||:|||| || |||||


target  3':AGAGGACCGAC--GUCUAGAACGGCUUUCAGUA 5'

 -18.40 24 RIC-seq
chrX:139865865:139865892:[+] chr5:147796717:147796747:[+] nonBSJ supported CDS

circRNA 5': UUCCACCAAAUCCAGGUCUU-CC---AGUCAA 3'


            |||| |||:|||| || |||||


target  3':AGAGGACCGAC--GUCUAGAACGGCUUUCAGUA 5'

 -18.20 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:147796717:147796747:[+] target 656377 chr5:147796726-147796727 G>A Distal_hereditary_motor_neuropathy_type_2|Neuronopathy,_distal_hereditary_motor,_type_2D ClinVar
chr5:147796717:147796747:[+] target - chr5:147796726-147796727 G>A LINC-JP ICGC