Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865542:139865569:[+] chr5:70806890:70806917:[+] nonBSJ supported 5UTR

circRNA 5':CCAGUCUUCCAGCAAUUACUGGUCUUCC 3'


            |||| |||||||||:|


target  3':AGUCAAACAGAACUCCAUGACCAGAGGA 5'

 -20.50 19 RIC-seq
chrX:139866025:139866078:[+] chr5:70838031:70838093:[+] nonBSJ supported CDS

circRNA 5':ACGUCUUCCCAACAAUCCAAGUCU-UCCGG----------AUAAUUUGGGU-CUUCCUGAAAAUCU 3'


            | |||| |||| ||| :|| |:|| :|||: |||||||| ||||


target  3': GGAGAAACUCAA--AGGUAAAGACGGGGAAACCAAUGUGUGUUUGACCUUUGAAGGACUAUUAGU 5'

 -31.90 16 RIC-seq
chrX:139866028:139866078:[+] chr5:70838031:70838093:[+] nonBSJ supported CDS

circRNA 5':UCUUCCCAACAA-UCCAAGUCU-UCCGG----------AUAAUUUGGGU-CUUCCUGAAAAUCU 3'


            |:|| |||| ||| :|| |:|| :|||: |||||||| ||||


target  3': GGAGAAACUCAAAGGUAAAGACGGGGAAACCAAUGUGUGUUUGACCUUUGAAGGACUAUUAGU 5'

 -31.10 1 RIC-seq
chrX:139866050:139866078:[+] chr5:70838031:70838060:[+] nonBSJ supported CDS

circRNA 5':CCGGAUAAUUUGGGU-CUUCCUGAAAAUCU 3'


            |: |:|| :|||: |||||||| ||||


target  3':UGUGUGUUUGACCUUUGAAGGACUAUUAGU 5'

 -25.40 1 RIC-seq