Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865352:139865407:[+] chr5:67591045:67591094:[+] nonBSJ supported CDS

circRNA 5':CACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGUCUUCC 3'


            || |||||| |||: |||| :| || || || ||||||||||||


target  3':AUGCAAACAGUUAAAGAGCUA---UGAG--UC-GACGGACGAAGAAGUUCAGAAGA 5'

 -38.90 2 RIC-seq
chrX:139865352:139865411:[+] chr5:67591038:67591094:[+] nonBSJ supported CDS

circRNA 5':CACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGUCU---UCCAAUA 3'


            || |||||| |||: |||| :| || || || |||||||||| ||||||


target  3':AUGCAAACAGUUAAAGAGCUA---UGAG--UC-GACGGACGAAGAAGUUCAGAAGAAGGUUAG 5'

 -40.80 21 RIC-seq
chrX:139865380:139865411:[+] chr5:67591038:67591078:[+] nonBSJ supported CDS

circRNA 5': CGGGUCUU-----CCAGCGACUUCAAGUCU---UCCAAUA 3'


            ||: ||: || || |||||||||| ||||||


target  3':AGCUAUGAGUCGACGGACGAAGAAGUUCAGAAGAAGGUUAG 5'

 -28.60 1 RIC-seq
chrX:139866490:139866526:[+] chr5:67592009:67592034:[+] nonBSJ supported CDS

circRNA 5':AGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAA 3'


            ||:| :||||| |:|||||| ||||


target  3': CCGUUUAGAAGUA---------GUAGAAGG-UGGUC 5'

 -24.70 1 RIC-seq
chrX:139866490:139866526:[+] chr5:67592009:67592035:[+] nonBSJ supported CDS

circRNA 5':AGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAA 3'


            ||:| :||||| |:|||||| ||||


target  3':CCCGUUUAGAAGUA---------GUAGAAGG-UGGUC 5'

 -25.50 23 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:67591038:67591078:[+] target 2951379 chr5:67591053-67591054 TGAAGAAGCAGGCAGCTGAGTATCGA>T Agammaglobulinemia_7,_autosomal_recessive|SHORT_syndrome|Immunodeficiency_36 ClinVar
chr5:67591038:67591094:[+] target 2951379 chr5:67591053-67591054 TGAAGAAGCAGGCAGCTGAGTATCGA>T Agammaglobulinemia_7,_autosomal_recessive|SHORT_syndrome|Immunodeficiency_36 ClinVar
chr5:67591045:67591094:[+] target 2951379 chr5:67591053-67591054 TGAAGAAGCAGGCAGCTGAGTATCGA>T Agammaglobulinemia_7,_autosomal_recessive|SHORT_syndrome|Immunodeficiency_36 ClinVar