Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866336:[+] chr5:10353959:10353976:[+] nonBSJ supported 5UTR

circRNA 5':AGCUUCCGAAAAAUCCAGGUC 3'


            |||:||| || ||:


target  3':CCGAGGGCGCC---GGCCCGC 5'

 -16.20 1 RIC-seq
chrX:139865335:139865349:[+] chr5:10411464:10411478:[+] nonBSJ supported CDS

circRNA 5': UCCAGGGUUUCCGAU 3'


            ||| |||:||| |


target  3':AAGGA-CCAGAGGGUU 5'

 -15.60 2 RIC-seq
chrX:139866330:139866356:[+] chr5:10405668:10405690:[+] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGGAAAUCCGUGUCUU 3'


            |||| | ||||| ||::||


target  3': GUCCUGU-GGUCCAGCUU-CAUGGA 5'

 -15.50 1 RIC-seq
chrX:139866355:139866431:[+] chr5:10391776:10391837:[+] nonBSJ supported CDS

circRNA 5':UUCC------AGCAAAU-CCACGUCUUCCAACAAAGCCA-UGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGUGUCUUCCA 3'


            ||| |||| | || |:||:||| || :||| :||| :|||||| ||| ||||:|||


target  3':GAGGCAAUAAUCGUAGACGGCGUAGGAGG-UG---UGGUCGCAG---------------UAGAAGGA-GGAGUA--ACAGGAGG 5'

 -50.90 2 RIC-seq
chrX:139866564:139866586:[+] chr5:10437714:10437735:[+] nonBSJ supported Exon

circRNA 5':AUAUGU--CUUCCAACUAAGCUACG 3'


            ||||| ||| || :||||


target  3':GAUACAAUGAAAGUAC---UGAUGU 5'

 -7.80 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:10405668:10405690:[+] target - chr5:10405683-10405684 G>A LINC-JP ICGC
chrX:139866316:139866336:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC