5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865473:139865509:[+] | chr5:10391787:10391816:[+] | nonBSJ supported | CDS |
circRNA 5':UGUCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCCA 3' |||:|||: || :|||||| ||| target 3':GUAGGAGGUGUGGUCGCAGUAGAAGG-------AGGA 5' |
-24.50 | 1 | RIC-seq |
| chrX:139865477:139865507:[+] | chr5:10381935:10381965:[+] | nonBSJ supported | CDS |
circRNA 5':UUCCGGACAAUCCAUGUCUUCCAA--GAAGCUC 3' |||:| ||| ||||||| |||||: target 3':CAGGUC-GUUUA-UACAGAACUUAACCUUCGGC 5' |
-21.60 | 1 | RIC-seq |
| chrX:139865487:139865518:[+] | chr5:10391790:10391820:[+] | nonBSJ supported | CDS |
circRNA 5':UCCAUGUCUUCCAAGA-AGC-UCCAAGUCUUCCA 3' || ::||:|||| ||| || :|||||| target 3':CGGCGUAGGAGGUGUGGUCGCAG---UAGAAGGA 5' |
-27.40 | 11 | RIC-seq |
| chrX:139866464:139866525:[+] | chr5:10415615:10415676:[+] | nonBSJ supported | CDS |
circRNA 5':UCCAACAAA-GGUA-UGU----CUUCCAACAAA-GGUACGUCU---UCCAGAAAAUCCACGUCUUCCAACCA 3' || |||| :|: ||| ||: ||:| |||: ||||:| ||| | |||| target 3':UGG-UGUUCGUCGACACAUCUCGAGUACCUAAAACCGU-CAGGGGCAGGUUU------UGCUGUAA-UUGG 5' |
-23.30 | 4 | RIC-seq |
| chrX:139866502:139866533:[+] | chr5:10415649:10415681:[+] | nonBSJ supported | CDS |
circRNA 5':CAGAAAAUCCACGUCUUCCAACCA--AGC-CAUGU 3' ||| ||||: ||| |||| target 3':AUCUCU--GGUGUUCGUCGACACAUCUCGAGUACC 5' |
-12.20 | 4 | RIC-seq |