Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865472:139865521:[+] chr4:114275396:114275444:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCCA-AGUC-UUC-CAGUA 3'


            ||:||| |:| |||| || :| ||| ||| ||||


target  3':CACGGAAAGUCAAAA----ACAGCUCCCACUAUGUCCACUCACAAAGAGUCAA 5'

 -15.80 7 RIC-seq
chrX:139865472:139865538:[+] chr4:114275377:114275444:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCCA-AGUC-UUC-CAGUAAA--UCAAGUCUUCCAGCA 3'


            ||:||| |:| |||| || :| ||| ||| |||| || |||


target  3':CACGGAAAGUCAAAA----ACAGCUCCCACUAUGUCCACUCACAAAGAGUCAAAAUGAGCUACUACUG-CGUC 5'

 -16.10 8 RIC-seq
chrX:139865481:139865486:[+] chr4:114275451:114275456:[+] nonBSJ supported CDS

circRNA 5':GGACAA 3'


            ||||


target  3':ACUGUG 5'

 -4.30 1 RIC-seq
chrX:139865635:139865679:[+] chr4:114199659:114199706:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAUCAAAUACAGAUCUUC-----CAGCUAAUCCAUGUCUUCC 3'


            ||: :|| |||:| |||| |||: ||||


target  3':ACCGUACUCCCCUUCGUGGGAAGAGGUCAUUGUCGUCGCGGUG--GAAGA 5'

 -18.80 17 RIC-seq
chrX:139865639:139865679:[+] chr4:114199659:114199685:[+] nonBSJ supported CDS

circRNA 5':CUUCCAUCAAAUACAGAUCUUCCAGCUAAUCCAUGUCUUCC 3'


            ||||| |||| |||| |||: ||||


target  3':AGAGGUCAU---UGUC------GUCGC---GGUG--GAAGA 5'

 -15.50 15 RIC-seq
chrX:139866028:139866051:[+] chr4:114263055:114263074:[+] nonBSJ supported CDS

circRNA 5':UCUUCCCAACAAUCCAAGUCUUCC 3'


            |:||| || |||| | ||||


target  3':UGGAGG--UG-UAGGGAC-GAAGA 5'

 -14.80 13 RIC-seq
chrX:139866093:139866122:[+] chr4:114263061:114263075:[+] nonBSJ supported CDS

circRNA 5':AGCCAUGUCUUCCAGAAAAUCCACAUCUUC 3'


            ||| ||||||||::


target  3':AUGG---------------AGGUGUAGGGA 5'

 -14.70 12 RIC-seq
chrX:139866165:139866196:[+] chr4:114290688:114290718:[+] nonBSJ supported CDS

circRNA 5':AAUCCUUGUCUUCCCUUAAAUCUAUAGCUUCC 3'


            ||| |:|||| ||| | |||


target  3':AUAGUAUCGGAAGACUCAG-AGACUACAAAGA 5'

 -9.70 1 RIC-seq
chrX:139866165:139866197:[+] chr4:114290682:114290717:[+] nonBSJ supported CDS

circRNA 5':AAUCCUUGUCUUCCCUUAAAUCUAUAG---CU--UCCA 3'


            ||| |:|||| ||| || |||


target  3': UAGUAUCGGAAGACUCAG-AGACUACAAAGACAAGGA 5'

 -9.80 1 RIC-seq
chrX:139866165:139866197:[+] chr4:114290682:114290718:[+] nonBSJ supported CDS

circRNA 5':AAUCCUUGUCUUCCCUUAAAUCUAUAG---CU--UCCA 3'


            ||| |:|||| ||| || |||


target  3':AUAGUAUCGGAAGACUCAG-AGACUACAAAGACAAGGA 5'

 -10.50 42 RIC-seq
chrX:139866171:139866197:[+] chr4:114290682:114290712:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCCUUAAAUCUAUAG---CU--UCCA 3'


            |:|||| ||| || |||


target  3':UCGGAAGACUCAG-AGACUACAAAGACAAGGA 5'

 -9.10 1 RIC-seq
chrX:139866183:139866197:[+] chr4:114290705:114290718:[+] nonBSJ supported CDS

circRNA 5':AAUCUAUAGCUUCCA 3'


            ||| |||||:| |


target  3':AUAG-UAUCGGAAGA 5'

 -9.10 16 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:114275377:114275444:[+] target 3376711 chr4:114275405-114275406 ACACT>A Neurodevelopmental_disorder ClinVar
chr4:114275396:114275444:[+] target 3376711 chr4:114275405-114275406 ACACT>A Neurodevelopmental_disorder ClinVar