Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866309:139866325:[+] chr4:83552007:83552030:[-] nonBSJ supported 3UTR

circRNA 5':AAUCCAUAGCUU---------CCGAA 3'


            |||| :||||: ||||


target  3': UAGG-GUCGAGAAACCCUCCGGCUC 5'

 -14.00 1 RIC-seq
chrX:139866309:139866345:[+] chr4:83552007:83552057:[-] nonBSJ supported 3UTR

circRNA 5':AAUCCAUAGCUU---------CCGAAAAAU--------CC--AGGUCUUCCAGGAA 3'


            |||| :||||: |||| || ||||| |||||


target  3': UAGG-GUCGAGAAACCCUCCGGCUCCGCCCACCUAACGGACUCCAG----UCCUUA 5'

 -21.10 5 RIC-seq
chrX:139866309:139866346:[+] chr4:83552007:83552057:[-] nonBSJ supported 3UTR

circRNA 5':AAUCCAUAGCUU---------CCGAAAAAU--------CC--AGGUCUUCCAGGAAA 3'


            |||| :||||: |||| || ||||| |||||


target  3': UAGG-GUCGAGAAACCCUCCGGCUCCGCCCACCUAACGGACUCCAG----UCCUUA 5'

 -21.60 11 RIC-seq
chrX:139866309:139866349:[+] chr4:83552007:83552060:[-] nonBSJ supported 3UTR

circRNA 5':AAUCCAUAGCUU---------CCGAAAAAU--------CC--AGGUCUUCCAGGAAAUCC 3'


            |||| :||||: |||| || ||||| ||||| ||


target  3': UAGG-GUCGAGAAACCCUCCGGCUCCGCCCACCUAACGGACUCCAG----UCCUUAAGC 5'

 -22.90 18 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:83552007:83552030:[-] target - chr4:83552009-83552010 C>G EOPC-DE ICGC
chr4:83552007:83552057:[-] target - chr4:83552009-83552010 C>G EOPC-DE ICGC
chr4:83552007:83552060:[-] target - chr4:83552009-83552010 C>G EOPC-DE ICGC
chrX:139866309:139866325:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866309:139866345:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866309:139866346:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866309:139866349:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC