Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866405:139866440:[+] chr4:20512707:20512742:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCC---AGCCUACUUGUGUCUUCCAACAAAGGUA 3'


            |||:| ||| | || |||: || ||:|


target  3':UCAGGAACCUUUCGUA-GACCACGUUCAA--GUCUCUAG 5'

 -10.90 1 RIC-seq
chrX:139866421:139866458:[+] chr4:20512707:20512747:[+] nonBSJ supported CDS

circRNA 5':UGUGUCUUCCAACAAAGGUACGUCUUC--CAA---CAAAGGUA 3'


            |:|| ||| ||:|: :||| ||| || ||:|


target  3':UCGCAUCAGGAACCUUUCG--UAGACCACGUUCAAGUCUCUAG 5'

 -13.00 18 RIC-seq
chrX:139866793:139866815:[+] chr4:20512723:20512756:[+] nonBSJ supported CDS

circRNA 5':CAUUCAG--------GUCUUCC---AGUGUCUGC 3'


            |||||| |||:| ||::||||


target  3':UUAAGUCUCUCGCAUCAGGAACCUUUCGUAGACC 5'

 -14.90 1 RIC-seq
chrX:139866793:139866818:[+] chr4:20512717:20512756:[+] nonBSJ supported CDS

circRNA 5':CAUUCAG--------GUCUUCC---AGUGUC---UGCAAU 3'


            |||||| |||:| ||::|| |||||


target  3':UUAAGUCUCUCGCAUCAGGAACCUUUCGUAGACCACGUUC 5'

 -15.10 9 RIC-seq