Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865377:139865406:[+] chr3:142499719:142499743:[+] nonBSJ supported CDS

circRNA 5':CUCCGGGUCUUCCAGCGACUUCAAGUCUUC 3'


            |||||| ||| ||:| ||:||:|


target  3': AGGCCC-GAACA-CGUUCA--UUUAGGAA 5'

 -19.20 14 RIC-seq
chrX:139865378:139865406:[+] chr3:142499719:142499742:[+] nonBSJ supported CDS

circRNA 5':UCCGGGUCUUCCAGCGACUUCAAGUCUUC 3'


            ||||| ||| ||:| ||:||:|


target  3': GGCCC-GAACA-CGUUCA--UUUAGGAA 5'

 -17.30 1 RIC-seq
chrX:139865415:139865441:[+] chr3:142499715:142499732:[+] nonBSJ supported CDS

circRNA 5':UCAAGGUCUUCCAGAUAAUCCUGAGCU 3'


            |||| |||||| |||


target  3':CGUUCAU---------UUAGGAAUCGU 5'

 -11.20 1 RIC-seq
chrX:139865418:139865441:[+] chr3:142499715:142499739:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUC--CAGAU-AAUCCUGAGCU 3'


            || ||| ||: |||||| |||


target  3': CC-GAACACGUUCAUUUAGGAAUCGU 5'

 -12.60 1 RIC-seq
chrX:139865419:139865468:[+] chr3:142499710:142499774:[+] nonBSJ supported CDS

circRNA 5': GGU---------CUUCCA------GAUAAUCCUGAGCUUC--C-AGAAAAUCCACAUCUUCCAGACAA 3'


            ||| |||||| || ||| |:| |||| | || |||||| ||:|||


target  3':ACCAAAUCUUAUUGAAGGUUAAGUGCUCUUAAGGCCCGAACACGUUCAUUUAGGAAUC----GUUUGUA 5'

 -22.90 14 RIC-seq
chrX:139865421:139865468:[+] chr3:142499710:142499762:[+] nonBSJ supported CDS

circRNA 5':UCUUCCA------GAUAAUCCUGAGCUUC--C-AGAAAAUCCACAUCUUCCAGACAA 3'


            |||||| || ||| |:| |||| | || |||||| ||:|||


target  3':UGAAGGUUAAGUGCUCUUAAGGCCCGAACACGUUCAUUUAGGAAUC----GUUUGUA 5'

 -21.70 4 RIC-seq