Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865432:139865453:[+] chr3:111694826:111694850:[+] nonBSJ supported 3UTR

circRNA 5':AUCCUGAGCU--UCCAG-AAAAUCC 3'


            |||| :|| || || ||||||


target  3':CAGGAAGUGACAAGUUCAUUUUAGA 5'

 -13.30 2 RIC-seq
chrX:139865673:139865733:[+] chr3:111602949:111603010:[+] nonBSJ supported CDS

circRNA 5':GUCUUC-CAGAAAA-AUCU--GUGUCUUCCACCAAAUCCAAGUCUUCCA----GUAAAUCUAGUUCUUC 3'


            |||: ||||| |:| | ||||||| || ||| || ||| ||||||||||:||:|


target  3':AAGAGUUGUCUUACGUGGUGUCUCAGAAGG------AGAUUC-GAUGGUAAAACAUUUAGAUCGAGGAA 5'

 -41.40 1 RIC-seq
chrX:139865674:139865733:[+] chr3:111602949:111603010:[+] nonBSJ supported CDS

circRNA 5': UCUUC-CAGAAAA-AUCU--GUGUCUUCCACCAAAUCCAAGUCUUCCA----GUAAAUCUAGUUCUUC 3'


            |||: ||||| |:| | ||||||| || ||| || ||| ||||||||||:||:|


target  3':AAGAGUUGUCUUACGUGGUGUCUCAGAAGG------AGAUUC-GAUGGUAAAACAUUUAGAUCGAGGAA 5'

 -41.40 1 RIC-seq