Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865516:139865533:[+] chr3:37369918:37369932:[+] nonBSJ supported CDS

circRNA 5':CCAGUAAAUCAAG-UCUUC 3'


            |||| ||||| ||||


target  3':AGUCA---AGUUCUAGAA 5'

 -10.50 2 RIC-seq
chrX:139865616:139865641:[+] chr3:37369919:37369938:[+] nonBSJ supported CDS

circRNA 5':AUGU-CUUCCAAUAAUUUCAAGGUCUU 3'


            ||| |||| ||||||:|||


target  3': ACACGAAGUC-----AAGUUCUAGA 5'

 -13.30 1 RIC-seq
chrX:139865616:139865642:[+] chr3:37369918:37369938:[+] nonBSJ supported CDS

circRNA 5':AUGU-CUUCCAAUAAUUUCAAGGUCUUC 3'


            ||| |||| ||||||:||||


target  3': ACACGAAGUC-----AAGUUCUAGAA 5'

 -14.20 8 RIC-seq
chrX:139866634:139866660:[+] chr3:37343698:37343723:[+] nonBSJ supported CDS

circRNA 5':CUCCAGGGCUUCCAGCAUCUGCUCGUC 3'


            ||||||| ||| ||||||| |||


target  3':AAGGUCCCAAAGUACGUAGACU-GCAA 5'

 -30.20 19 RIC-seq