Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866757:139866791:[+] chr2:166868729:166868762:[-] nonBSJ supported CDS

circRNA 5':AUGUC------UUCCAACGUCUCCAGUGUGCUGAUCUUCUG 3'


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target  3': ACAGUCGUAUAAGGUUGUAG------CAGAAUUAGCAGAA 5'

 -20.90 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:166868729:166868762:[-] target 3625115 chr2:166868734-166868735 G>A Early_infantile_epileptic_encephalopathy_with_suppression_bursts|not_provided ClinVar
chr2:166868729:166868762:[-] target 801799 chr2:166868734-166868735 G>GCATATTC Severe_myoclonic_epilepsy_in_infancy ClinVar
chr2:166868729:166868762:[-] target 189879 chr2:166868735-166868736 C>G Severe_myoclonic_epilepsy_in_infancy ClinVar
chr2:166868729:166868762:[-] target 861530 chr2:166868736-166868737 A>T Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Generalized_epilepsy_with_febrile_seizures_plus,_type_2 ClinVar
chr2:166868729:166868762:[-] target 189986 chr2:166868741-166868742 C>A Severe_myoclonic_epilepsy_in_infancy ClinVar
chr2:166868729:166868762:[-] target 580762 chr2:166868746-166868747 A>C Early_infantile_epileptic_encephalopathy_with_suppression_bursts|not_specified ClinVar
chr2:166868729:166868762:[-] target - chr2:166868746-166868747 A>T LINC-JP ICGC