Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866665:139866719:[+] chr1:243288055:243288129:[-] nonBSJ supported 3UTR

circRNA 5': AACAUCUCCACG---UCUUCC-AGCAUCUCUGUGUC-UUCCAGCAUC-----------------UUCAUGUCUUCCA 3'


            ||||| || :|||| ||||| |||:|| ||||| |||| |||||||


target  3':AUUGUAAAGCAAAUAAGGAAGUUUCGUAA--ACAUAGAAAGGUAAAUACAAGAAAUUUUGGAAAAAAGU-CAGAAGGA 5'

 -35.10 1 RIC-seq
chrX:139865528:139865561:[+] chr1:243388584:243388617:[-] nonBSJ supported 5UTR

circRNA 5':GUCUUCC-AGCAAAUCC-AGUCUUCCAGCAA--UUACU 3'


            ||| ||| || |||||| |||| :|||


target  3':AAGACGAAUCGA--AGAUUCAGAAAC-CGUUUCGAUG 5'

 -12.80 1 RIC-seq
chrX:139865528:139865561:[+] chr1:243388584:243388618:[-] nonBSJ supported 5UTR

circRNA 5':GUCUUCC-AGCAAAUCC-AGUCUUCCAGCAA--UUACU 3'


            ||| ||| || |||||| |||| :|||


target  3':AAGACGAAUCGA--AGAUUCAGAAAC-CGUUUCGAUGC 5'

 -13.00 1 RIC-seq
chrX:139865650:139865691:[+] chr1:243385086:243385119:[-] nonBSJ supported CDS

circRNA 5':UACAGAUCUUCCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGU 3'


            |||| ||| |||||:: || | ||| |||


target  3':CUGUCGCACAA--CGAAUAGGUGU-GAUGCUCU-----GACU 5'

 -15.90 2 RIC-seq
chrX:139865877:139865930:[+] chr1:243362413:243362450:[-] nonBSJ supported CDS

circRNA 5':CAGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCAA 3'


            || |||| || |||||| || || :||::|| :|||


target  3':UUCGAGAAAAA-AG-UAGGUGGAGUAG--------------UAGGGGGGUGGUA 5'

 -28.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865877:139865930:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC