Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866601:139866629:[+] chr1:153800525:153800547:[-] nonBSJ supported CDS

circRNA 5':CAUGUCUUCCUAUAUCUCCAGGUCUUCCA 3'


            |||| ||| || ||:|||||


target  3': UACAAAAGAAAC----GGACCGGAAGG 5'

 -17.50 1 RIC-seq
chrX:139866601:139866631:[+] chr1:153800525:153800551:[-] nonBSJ supported CDS

circRNA 5':CAUGUCUUCCUAUAUCUCCAGGUCUUCCAGC 3'


            |||| ||| || ||:||||||||


target  3': UACAAAAGAAAC----GGACCGGAAGGUCGU 5'

 -23.40 1 RIC-seq
chrX:139866601:139866635:[+] chr1:153800525:153800554:[-] nonBSJ supported CDS

circRNA 5':CAUGUCUUCCUAUAUCUCCAGGUCUUCCAGCA-UCU 3'


            |||| ||| || ||:||||||||| ||


target  3': UACAAAAGAAAC----GGACCGGAAGGUCGUCAG 5'

 -26.40 1 RIC-seq
chrX:139866601:139866638:[+] chr1:153800525:153800555:[-] nonBSJ supported CDS

circRNA 5':CAUGUCUUCCUAUAUCUCCAGGUCUUCCAGCAUCUCCA 3'


            |||| ||| || ||:||||||||| |||


target  3': UACAAAAGAAAC----GGACCGGAAGGUCGUC-AGG 5'

 -29.20 6 RIC-seq
chrX:139866601:139866638:[+] chr1:153800525:153800556:[-] nonBSJ supported CDS

circRNA 5':CAUGUCUUCCUAUAUCUCCAGGUCUUCCAGCAUCUCCA 3'


            |||| ||| || ||:||||||||| |||


target  3': UACAAAAGAAAC----GGACCGGAAGGUCGUC-AGGA 5'

 -29.00 19 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:153800525:153800551:[-] target 985950 chr1:153800549-153800550 G>GCAGT Inborn_genetic_diseases ClinVar
chr1:153800525:153800554:[-] target 985950 chr1:153800549-153800550 G>GCAGT Inborn_genetic_diseases ClinVar
chr1:153800525:153800555:[-] target 985950 chr1:153800549-153800550 G>GCAGT Inborn_genetic_diseases ClinVar
chr1:153800525:153800556:[-] target 985950 chr1:153800549-153800550 G>GCAGT Inborn_genetic_diseases ClinVar