Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866305:139866365:[+] chr1:223977450:223977497:[-] nonBSJ supported Intron

circRNA 5':CUCAAAUCCA--UAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAU 3'


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target  3':AAGUUGAUAUCCAUUGA-------------CCAGUC-GUCCUUAAAUAAUUAU-GGUAAUUUC 5'

 -16.50 1 RIC-seq
chrX:139866334:139866362:[+] chr1:223977450:223977473:[-] nonBSJ supported Intron

circRNA 5':GUCUUCC--AGGAAAUCCGUGUCUUCCAGCA 3'


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target  3':AAGUUGAUAUCCAUUGACCA------GUCG 5'

 -7.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866305:139866365:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC