Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866228:139866264:[+] chr1:150938953:150938981:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCAAGUCCACGUCUUCCAACAAAGCCAUGUC 3'


            |||||| || ||||||:


target  3':AAAGGUCAAUACU-UGAACACC-------CGGUACGC 5'

 -14.70 8 RIC-seq
chrX:139866238:139866264:[+] chr1:150938955:150938981:[-] nonBSJ supported CDS

circRNA 5':GUCCACGUCUUCCAACAAA--GCCAUGUC 3'


            |||| || ||||||:


target  3': AGGU-CAAUACUUGAACACCCGGUACGC 5'

 -13.10 1 RIC-seq
chrX:139866256:139866264:[+] chr1:150938973:150938981:[-] nonBSJ supported CDS

circRNA 5':AGCCAUGUC 3'


            ||||||:


target  3':CCGGUACGC 5'

 -11.50 1 RIC-seq
chrX:139866766:139866801:[+] chr1:150938510:150938541:[-] nonBSJ supported Intron

circRNA 5':AACGUCUCCAGUGUGCUGAUCUUCUGACA-UUCAGGU 3'


            || ||||| | :|| |||:|| ::|||:


target  3': UG-AGAGGAGAG-UGAA-AGAGGAAAAAGGGGUCU 5'

 -20.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:150938953:150938981:[-] target - chr1:150938980-150938981 C>T PACA-CA ICGC
chr1:150938955:150938981:[-] target - chr1:150938980-150938981 C>T PACA-CA ICGC
chr1:150938973:150938981:[-] target - chr1:150938980-150938981 C>T PACA-CA ICGC
chrX:139866766:139866801:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC