Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866279:139866306:[+] chr1:150549587:150549608:[-] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAGAAAAUCCUUGUCUUCCCU 3'


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target  3':UCAGGAGG------AGGUAUCGAAGGGU 5'

 -23.10 1 RIC-seq
chrX:139866297:139866327:[+] chr1:150549587:150549610:[-] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCCUCAAAUCCAUAGCUUCCGAAAA 3'


            |||:||| |||||||||||| |||


target  3':UCAGGAGG------AGGUAUCGAAGGGUUU 5'

 -33.10 15 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866297:139866327:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC