Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866613:139866647:[+] chr1:165370507:165370561:[-] nonBSJ supported CDS

circRNA 5':UAUCUCCA----GGUCUUCCAGCAUCUCCA------------------GGGCUUCCA 3'


            |||| || |||| ||||:|||||||| ||| |||


target  3': UAGACGUCGCCCCAG-AGGUUGUAGAGGUACUCCUUCCACAGUUACCCCCACAGGG 5'

 -36.60 1 RIC-seq
chrX:139866613:139866663:[+] chr1:165370507:165370563:[-] nonBSJ supported CDS

circRNA 5':UAUCUCCA----GGUCUUCCAGCAUCUCCA--GGGCUUCCAGCAUCUGCUC-GUCUUC 3'


            |||| || |||| ||||:|||||||| :|| || |||::|


target  3': UAGACGUCGCCCCAG-AGGUUGUAGAGGUACUCCUUCCACAGUUACCCCCACAGGGGC 5'

 -37.60 4 RIC-seq
chrX:139866613:139866664:[+] chr1:165370507:165370563:[-] nonBSJ supported CDS

circRNA 5':UAUCUCCA----GGUCUUCCAGCAUCUCCA--GGGCUUCCAGCAUCUGCUC-GUCUUCC 3'


            |||| || |||| ||||:|||||||| :|| || |||::|


target  3': UAGACGUCGCCCCAG-AGGUUGUAGAGGUACUCCUUCCACAGUUACCCCCACAGGGGC 5'

 -38.40 6 RIC-seq
chrX:139866620:139866663:[+] chr1:165370517:165370563:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCAUCUCCA--GGGCUUCCAGCAUCUGCUC-GUCUUC 3'


            |||| ||||:|||||||| :|| || |||::|


target  3':CCCAG-AGGUUGUAGAGGUACUCCUUCCACAGUUACCCCCACAGGGGC 5'

 -36.50 1 RIC-seq