Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866745:139866805:[+] chr1:167991750:167991820:[+] nonBSJ supported Intron

circRNA 5':GGCUCAAUAUCC--------AUGUCUUCCAACGU-CUCCAGUGUGCUGAUCUU----CUGACAUUCAGGUCUUC 3'


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target  3':ACGAGUGAUAUGAAACUCUCUACAACAAACGACAUGA---CACCCGACUUGUUCCUCGAUUGUAGUUCUAGAAU 5'

 -30.70 1 RIC-seq
chrX:139866775:139866805:[+] chr1:167991750:167991784:[+] nonBSJ supported Intron

circRNA 5':AGUGUGCUGAUCUU----CUGACAUUCAGGUCUUC 3'


            ||| ||||| | ||:||||: ||:||||


target  3':ACACCCGACUUGUUCCUCGAUUGUAGUUCUAGAAU 5'

 -25.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866745:139866805:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866775:139866805:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC