Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865678:139865714:[+] chr1:84703492:84703515:[+] nonBSJ supported 3UTR

circRNA 5':CCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAGUCUU 3'


            |||| |||||| || || |||||


target  3':AGUCU--------ACAGAAC-UGAA--AG--UCAGAU 5'

 -10.50 50 RIC-seq
chrX:139865689:139865714:[+] chr1:84703492:84703512:[+] nonBSJ supported 3UTR

circRNA 5':UGUGUCUUCCACCAAAUCCAAGUCUU 3'


            ||||||| || || |||||


target  3':CUACAGAAC-UGAA--AG--UCAGAU 5'

 -9.50 1 RIC-seq
chrX:139866579:139866610:[+] chr1:84700916:84700948:[+] nonBSJ supported CDS

circRNA 5':AAGCUACG----UCUUCCAACAAAUCCAU-GUCUUCC 3'


            || :||| ||||| ||| ||| ||


target  3':CUCUGUGCCUAUAGAAGAAGAA----GUAUCAGUAGU 5'

 -9.50 1 RIC-seq
chrX:139866593:139866636:[+] chr1:84700900:84700946:[+] nonBSJ supported CDS

circRNA 5':AACAAAUCCAUGUCUUCCUAUAUCUCCA-GGUCUUCCA----GC----AUCUC 3'


            ||| ||:||||| ||| || :||| || || |||||


target  3':CUGUGCC--UAUAGAAGA----AGAAGUAUCAGUAGUUUCAACGACCAUAGAG 5'

 -15.60 1 RIC-seq
chrX:139866593:139866654:[+] chr1:84700900:84700946:[+] nonBSJ supported CDS

circRNA 5':AACAAAUCCAUGUCUUCCUAUAUCUCCAGGUCUUCC-AG-CAUCUCCAGGGCUUCCAGCAUCUG 3'


            ||| ||:||||| ||||| || |||| ||| ||||


target  3':CUGUGCC--UAUAGAAGA------------AGAAGUAUCAGUAGUUUCAACGACCA---UAGAG 5'

 -18.00 15 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866579:139866610:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866579:139866610:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC