Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865432:139865472:[+] chr1:27608738:27608775:[+] nonBSJ supported CDS

circRNA 5':AUCCUGAGCUUC-CAGAAAAUCCACAUCUUCCAGACA--------AUCCA 3'


            |||| ||| || ||||| |||||||| ||||


target  3':GAGGA----AAGAGUA----AGGUG----AGGUCUGUCAACUGUGUAGGA 5'

 -23.60 1 RIC-seq
chrX:139865432:139865479:[+] chr1:27608737:27608775:[+] nonBSJ supported CDS

circRNA 5':AUCCUGAGCUUC-CAGAAAAUCCACAUCUUCCAGACAAUC--CAUGUCUUC 3'


            |||| ||| || ||||| |||||||| ||::||:|


target  3':GAGGA----AAGAGUA----AGGUG----AGGUCUGUCAACUGUGUAGGAC 5'

 -26.60 28 RIC-seq
chrX:139865456:139865485:[+] chr1:27608750:27608777:[+] nonBSJ supported CDS

circRNA 5':AUCUUCCAGA-CAAUCCAUGUCUUCCGGACA 3'


            |||:| || ||||: |||:||||


target  3':GAGAGGAAAGAGUAAGGUG----AGGUCUGUC 5'

 -20.80 1 RIC-seq