Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865911:139865945:[+] chr1:24021213:24021234:[+] nonBSJ supported CDS

circRNA 5':AAUCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGA 3'


            |:||||:|| |||| ||||||


target  3':AUGGGUCUAGC------------UACACAAGGAC 5'

 -20.90 8 RIC-seq
chrX:139865970:139866019:[+] chr1:24021197:24021237:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUCCCAGUCUUCCAGAA 3'


            || :||||| || |||| |||| |||||: |||:|


target  3': ACUAUGGGUCU---AGCUACACAAGGACCU---AGGGUUUU--GGUUUC 5'

 -26.50 12 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:24021197:24021237:[+] target 1729829 chr1:24021213-24021214 C>T Diamond-Blackfan_anemia ClinVar
chr1:24021213:24021234:[+] target 1729829 chr1:24021213-24021214 C>T Diamond-Blackfan_anemia ClinVar