Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865784:139865811:[+] chr19:49993758:49993785:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAAUCAGUG-UCUUCCA 3'


            ||:||: ||| || |||


target  3': CCGGAGCCCUUCCCAACCACAAGUAGGC 5'

 -14.20 1 RIC-seq
chrX:139865784:139865811:[+] chr19:49993758:49993786:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAAUCAGUG-UCUUCCA 3'


            ||:||: ||| || |||


target  3':CCCGGAGCCCUUCCCAACCACAAGUAGGC 5'

 -15.00 1 RIC-seq
chrX:139865785:139865811:[+] chr19:49993491:49993521:[+] nonBSJ supported CDS

circRNA 5':GGUCUUC-CAGU---CAAUCAGUGUCUUCCA 3'


            |:|||| |||: | |:|| :::|||||


target  3':ACGGAAGUGUCGCAUGCUGGUGGUGGAAGGC 5'

 -23.80 37 RIC-seq