Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866043:139866089:[+] chr19:50000508:50000545:[+] nonBSJ supported 5UTR

circRNA 5':AAGUCUUCCGGAUAAUUUGGGU-CUUC-CUGAAAAUCUACGUCUUCCAA 3'


            ||| ||| :||| |||| |: :| |||:|||


target  3':AUCAU--GGC-------GCCCUCGAAGAGGAAC--GGUCAAAGAGGGUC 5'

 -21.00 15 RIC-seq
chrX:139866753:139866774:[+] chr19:50000510:50000528:[+] nonBSJ supported 5UTR

circRNA 5':AUCCAUGUCUUCCAACGUCUCC 3'


            ||| ||:| |||||


target  3':GAGGAACGGUCAA----AGAGGG 5'

 -12.60 1 RIC-seq
chrX:139866753:139866775:[+] chr19:50000510:50000528:[+] nonBSJ supported 5UTR

circRNA 5':AUCCAUGUCUUCCAACGUCUCCA 3'


            ||| ||:| |||||


target  3':GAGGAACGGUCAA----AGAGGG 5'

 -14.00 6 RIC-seq
chrX:139866757:139866790:[+] chr19:50000547:50000574:[+] nonBSJ supported 5UTR

circRNA 5':AUGUCUUCCAACGUCUCCAGUGUGCUGAUCUUCU 3'


            |||||| :|||| :|:||| ||||


target  3':CACAGAACUUC----GGGUC---UGGCUACAAGAA 5'

 -17.30 11 RIC-seq
chrX:139866050:139866072:[+] chr19:50001196:50001217:[+] nonBSJ supported CDS

circRNA 5':CCGGAUAAUUUGGGUCUUCCUGA 3'


            ||||| |: ||||:| |||


target  3':CGCCUACUGUUACCAGGA-GACG 5'

 -18.70 29 RIC-seq
chrX:139866061:139866086:[+] chr19:50001184:50001206:[+] nonBSJ supported CDS

circRNA 5':GGGUCUUCCUGAAAAUCUACGUCUUC 3'


            ||||:| ||| |||| |:||||


target  3':ACCAGGA-GACG--UAGAAGUAGAAC 5'

 -20.40 1 RIC-seq
chrX:139866097:139866133:[+] chr19:50001198:50001238:[+] nonBSJ supported CDS

circRNA 5': AUGUCUUCCAGAAAA--UCCACAUCUUCCAAUGG-CCUCC 3'


            |||| |||| || |||||| ||||


target  3':CUACAUCACGUCUAUCAGAGCCGCCUACUGUUACCAGGAGA 5'

 -17.80 32 RIC-seq
chrX:139866098:139866133:[+] chr19:50001198:50001237:[+] nonBSJ supported CDS

circRNA 5': UGUCUUCCAGAAAA--UCCACAUCUUCCAAUGG-CCUCC 3'


            ||| |||| || |||||| ||||


target  3':UACAUCACGUCUAUCAGAGCCGCCUACUGUUACCAGGAGA 5'

 -17.20 1 RIC-seq
chrX:139866099:139866133:[+] chr19:50001198:50001236:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCAGAAAA--UCCACAUCUUCCAAUGG-CCUCC 3'


            || |||| || |||||| ||||


target  3':ACAUCACGUCUAUCAGAGCCGCCUACUGUUACCAGGAGA 5'

 -16.70 2 RIC-seq