Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865349:139865400:[+] chr19:54488328:54488364:[+] nonBSJ supported 3UTR

circRNA 5':UGGCACCUGUGUCAAGGUCUUCCAACAACUCCGG-GUCUUC-CAGCG-ACUUCAA 3'


            ||| |||| |:|| |:|||| ||| | |||||||


target  3':CCCGC-GACA------------------GGGGAGACGGAAGAGUCACUUGAAGUUU 5'

 -29.80 11 RIC-seq
chrX:139865349:139865400:[+] chr19:54488329:54488364:[+] nonBSJ supported 3UTR

circRNA 5':UGGCACCUGUGUCAAGGUCUUCCAACAACUCCGG-GUCUUC-CAGCG-ACUUCAA 3'


            ||| |||| |:|| |:|||| ||| | ||||||


target  3':CCCGC-GACA------------------GGGGAGACGGAAGAGUCACUUGAAGUU 5'

 -29.70 1 RIC-seq
chrX:139865376:139865400:[+] chr19:54488328:54488356:[+] nonBSJ supported 3UTR

circRNA 5':ACUCCGG-GUCUUC-CAGCG-ACUUCAA 3'


            |:|| |:|||| ||| | |||||||


target  3':AGGGGAGACGGAAGAGUCACUUGAAGUUU 5'

 -25.30 1 RIC-seq
chrX:139866057:139866104:[+] chr19:54492659:54492695:[+] nonBSJ supported 3UTR

circRNA 5':AUUUGGGUCUUCCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUCUUC 3'


            |:|||||||| || |||||||:|| |:|||:


target  3':GAGACCCAGAAAGAGGCCGA-AUGCAGAGGG----------AUAGAGA 5'

 -33.20 13 RIC-seq